As many will have read, there were a number of press reports (NYT, Guardian, InsideClimate) about the non-disclosure of Willie Soon’s corporate funding (from Southern Company (an energy utility), Koch Industries, etc.) when publishing results in journals that require such disclosures. There are certainly some interesting questions to be asked (by the OIG!) about adherence to the Smithsonian’s ethics policies, and the propriety of Smithsonian managers accepting soft money with non-disclosure clauses attached.
However, a valid question is whether the science that arose from these funds is any good? It’s certainly conceivable that Soon’s work was too radical for standard federal research programs and that these energy companies were really taking a chance on blue-sky high risk research that might have the potential to shake things up. In such a case, someone might be tempted to overlook the ethical lapses and conflicts of interest for the sake of scientific advancement (though far too many similar post-hoc justifications have been used to excuse horrific unethical practices for this to be remotely defendable).
Unfortunately, the evidence from the emails and the work itself completely undermines that argument because the work and the motivation behind it are based on a scientific fallacy.